Research & software
Demographic inference with moments-LD
Reconstructing population size histories and split times for Indigenous populations of Mexico from linkage-disequilibrium decay patterns in whole-genome data.Code and pipeline: github.com/santiago1234/…
ARG-based demographic reconstruction
Using ancestral recombination graphs (SINGER) to recover fine-scale demographic signals not accessible to summary-statistic methods.Code: github.com/santiago1234/…
Pangenome assembly pipelines
HiFi-based genome assembly (hifiasm) and pangenome construction workflows applied to underrepresented populations.Pipeline: github.com/santiago1234/…